HL_8XT1_033

3D structure

PDB id

8XT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with 5uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGUCCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT1_033 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.1823

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8XT1|1|L1|A|1288
8XT1|1|L1|G|1289
8XT1|1|L1|U|1290
8XT1|1|L1|C|1291
8XT1|1|L1|C|1292
8XT1|1|L1|A|1293
8XT1|1|L1|U|1294
8XT1|1|L1|A|1295
8XT1|1|L1|U|1296

Current chains

Chain L1

16s rRNA

Nearby chains

Chain L4

Large ribosomal subunit protein mL54

Chain Lj

Large ribosomal subunit protein bL36m