HL_8XT2_006
3D structure
- PDB id
- 8XT2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UUCUGCAUAA
- Length
- 10 nucleotides
- Bulged bases
- 8XT2|1|L1|A|185
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8XT2_006 not in the Motif Atlas
- Homologous match to HL_5J7L_150
- Geometric discrepancy: 0.0913
- The information below is about HL_5J7L_150
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
8XT2|1|L1|U|177
8XT2|1|L1|U|178
8XT2|1|L1|C|179
8XT2|1|L1|U|180
8XT2|1|L1|G|181
8XT2|1|L1|C|182
8XT2|1|L1|A|183
8XT2|1|L1|U|184
8XT2|1|L1|A|185
8XT2|1|L1|A|186
Current chains
- Chain L1
- 16s rRNA
Nearby chains
- Chain L6
- Large ribosomal subunit protein mL63
- Chain LC
- Large ribosomal subunit protein uL3m
- Chain LO
- Large ribosomal subunit protein uL15m
- Chain LU
- Large ribosomal subunit protein bL21m
- Chain Lf
- Large ribosomal subunit protein bL32m
Coloring options: