HL_8XT2_024

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CACAUG

Length

6 nucleotides

Bulged bases

8XT2|1|L1|A|888, 8XT2|1|L1|U|889

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT2_024 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1101

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

8XT2|1|L1|C|885
8XT2|1|L1|A|886
8XT2|1|L1|C|887
8XT2|1|L1|A|888
8XT2|1|L1|U|889
8XT2|1|L1|G|890

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL2m

Chain S1

Small subunit ribosomal RNA; SSU rRNA