HL_8XT2_030

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCAGAACCCAACC

Length

13 nucleotides

Bulged bases

8XT2|1|L1|G|1161, 8XT2|1|L1|A|1162, 8XT2|1|L1|C|1169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XT2|1|L1|G|1158
8XT2|1|L1|C|1159
8XT2|1|L1|A|1160
8XT2|1|L1|G|1161
8XT2|1|L1|A|1162
8XT2|1|L1|A|1163
8XT2|1|L1|C|1164
8XT2|1|L1|C|1165
8XT2|1|L1|C|1166
8XT2|1|L1|A|1167
8XT2|1|L1|A|1168
8XT2|1|L1|C|1169
8XT2|1|L1|C|1170

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LP

Large ribosomal subunit protein uL16m

Chain La

Large ribosomal subunit protein bL27m

Chain Ld

Large ribosomal subunit protein uL30m

Chain Ll

Large ribosomal subunit protein mL38

Chain Lv

Large ribosomal subunit protein mL48