HL_8XT2_037

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT2_037 not in the Motif Atlas

Geometric match to HL_2R8S_001

Geometric discrepancy: 0.0775

The information below is about HL_2R8S_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8XT2|1|L1|C|1456
8XT2|1|L1|G|1457
8XT2|1|L1|A|1458
8XT2|1|L1|A|1459
8XT2|1|L1|A|1460
8XT2|1|L1|G|1461

Current chains

Chain L1

16s rRNA

Nearby chains