HL_8XT2_039
3D structure
- PDB id
- 8XT2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AAUGAUAUCAUCUCAACU
- Length
- 18 nucleotides
- Bulged bases
- 8XT2|1|L1|U|1513, 8XT2|1|L1|C|1519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8XT2_039 not in the Motif Atlas
- Geometric match to HL_7A0S_074
- Geometric discrepancy: 0.262
- The information below is about HL_7A0S_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_28904.1
- Basepair signature
- cWW-F-F-tWH-cWH-tSH-tHW-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8XT2|1|L1|A|1506
8XT2|1|L1|A|1507
8XT2|1|L1|U|1508
8XT2|1|L1|G|1509
8XT2|1|L1|A|1510
8XT2|1|L1|U|1511
8XT2|1|L1|A|1512
8XT2|1|L1|U|1513
8XT2|1|L1|C|1514
8XT2|1|L1|A|1515
8XT2|1|L1|U|1516
8XT2|1|L1|C|1517
8XT2|1|L1|U|1518
8XT2|1|L1|C|1519
8XT2|1|L1|A|1520
8XT2|1|L1|A|1521
8XT2|1|L1|C|1522
8XT2|1|L1|U|1523
Current chains
- Chain L1
- 16s rRNA
Nearby chains
- Chain L3
- Large ribosomal subunit protein mL53
- Chain LM
- Large ribosomal subunit protein uL13m
- Chain Lj
- Large ribosomal subunit protein bL36m
- Chain SR
- Large ribosomal subunit protein mL66
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