HL_8XT2_040

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAGAACAG

Length

9 nucleotides

Bulged bases

8XT2|1|L1|A|1547

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT2_040 not in the Motif Atlas

Geometric match to HL_7RQB_068

Geometric discrepancy: 0.1011

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8XT2|1|L1|C|1546
8XT2|1|L1|A|1547
8XT2|1|L1|A|1548
8XT2|1|L1|G|1549
8XT2|1|L1|A|1550
8XT2|1|L1|A|1551
8XT2|1|L1|C|1552
8XT2|1|L1|A|1553
8XT2|1|L1|G|1554

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL3m

Chain LQ

Large ribosomal subunit protein bL17m

Chain LS

Large ribosomal subunit protein bL19m

Chain Lf

Large ribosomal subunit protein bL32m