HL_8XT2_054

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCACAG

Length

6 nucleotides

Bulged bases

8XT2|1|S1|C|504, 8XT2|1|S1|A|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT2_054 not in the Motif Atlas

Geometric match to HL_6TQB_001

Geometric discrepancy: 0.209

The information below is about HL_6TQB_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

8XT2|1|S1|C|503
8XT2|1|S1|C|504
8XT2|1|S1|A|505
8XT2|1|S1|C|506
8XT2|1|S1|A|507
8XT2|1|S1|G|508

Current chains

Chain S1

12s rRNA

Nearby chains

Chain L1

Large subunit ribosomal RNA; LSU rRNA

Chain SO

Small ribosomal subunit protein uS15m

Chain Sn

Small ribosomal subunit protein mS38