HL_8XT2_058

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UACCCCA

Length

7 nucleotides

Bulged bases

8XT2|1|S1|C|730, 8XT2|1|S1|C|731

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XT2_058 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1762

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8XT2|1|S1|U|726
8XT2|1|S1|A|727
8XT2|1|S1|C|728
8XT2|1|S1|C|729
8XT2|1|S1|C|730
8XT2|1|S1|C|731
8XT2|1|S1|A|732

Current chains

Chain S1

12s rRNA

Nearby chains

Chain SG

Small ribosomal subunit protein uS7m

Chain SI

Small ribosomal subunit protein uS9m

Chain Se

Small ribosomal subunit protein mS29