HL_8XU8_002

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAUUUAUACAG

Length

12 nucleotides

Bulged bases

8XU8|1|2|U|73, 8XU8|1|2|U|74, 8XU8|1|2|U|77

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XU8_002 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.2048

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8XU8|1|2|C|70
8XU8|1|2|A|71
8XU8|1|2|A|72
8XU8|1|2|U|73
8XU8|1|2|U|74
8XU8|1|2|U|75
8XU8|1|2|A|76
8XU8|1|2|U|77
8XU8|1|2|A|78
8XU8|1|2|C|79
8XU8|1|2|A|80
8XU8|1|2|G|81

Current chains

Chain 2

18S rRNA

Nearby chains

Chain ST

Small ribosomal subunit protein eS6A

Chain Y

Large ribosomal subunit protein eL24A