HL_8XU8_009

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XU8_009 not in the Motif Atlas

Geometric match to HL_9DFE_033

Geometric discrepancy: 0.314

The information below is about HL_9DFE_033

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8XU8|1|2|U|368
8XU8|1|2|A|369
8XU8|1|2|A|370
8XU8|1|2|G|371
8XU8|1|2|G|372
8XU8|1|2|G|373

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SR

Small ribosomal subunit protein uS5

Chain SW

Small ribosomal subunit protein uS4A

Chain SX

Small ribosomal subunit protein uS17A

Chain Sb

Small ribosomal subunit protein uS8A

Chain Sc

Small ribosomal subunit protein uS12A