HL_8XU8_012

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

8XU8|1|2|A|452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XU8_012 not in the Motif Atlas

Homologous match to HL_8P9A_201

Geometric discrepancy: 0.3229

The information below is about HL_8P9A_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

8XU8|1|2|U|450
8XU8|1|2|A|451
8XU8|1|2|A|452
8XU8|1|2|U|453
8XU8|1|2|U|454
8XU8|1|2|C|455
8XU8|1|2|A|456

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SS

Small ribosomal subunit protein eS4A

Chain Sd

Small ribosomal subunit protein eS24A