HL_8XU8_022

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

8XU8|1|2|U|1059, 8XU8|1|2|U|1060

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XU8_022 not in the Motif Atlas

Homologous match to HL_8P9A_212

Geometric discrepancy: 0.383

The information below is about HL_8P9A_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61768.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8XU8|1|2|U|1055
8XU8|1|2|U|1056
8XU8|1|2|U|1057
8XU8|1|2|U|1058
8XU8|1|2|U|1059
8XU8|1|2|U|1060
8XU8|1|2|A|1061
8XU8|1|2|A|1062
8XU8|1|2|U|1063
8XU8|1|2|G|1064

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SQ

Small ribosomal subunit protein eS1A

Chain Sf

Small ribosomal subunit protein eS27A