HL_8XU8_062

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XU8_062 not in the Motif Atlas

Homologous match to HL_8P9A_140

Geometric discrepancy: 0.1263

The information below is about HL_8P9A_140

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8XU8|1|A|U|1267
8XU8|1|A|G|1268
8XU8|1|A|U|1269
8XU8|1|A|A|1270
8XU8|1|A|A|1271
8XU8|1|A|C|1272
8XU8|1|A|A|1273
8XU8|1|A|A|1274

Current chains

Chain A

25S rRNA

Nearby chains

Chain o

Large ribosomal subunit protein eL40A

Chain x

Elongation factor 2