HL_8XU8_067

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAGCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XU8_067 not in the Motif Atlas

Homologous match to HL_8C3A_033

Geometric discrepancy: 0.1216

The information below is about HL_8C3A_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8XU8|1|A|G|1544
8XU8|1|A|A|1545
8XU8|1|A|A|1546
8XU8|1|A|G|1547
8XU8|1|A|C|1548
8XU8|1|A|U|1549

Current chains

Chain A

25S rRNA

Nearby chains

Chain P

Large ribosomal subunit protein eL15A

Chain l

Large ribosomal subunit protein eL37A