HL_8XU8_068

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGAUUUUAUGCAG

Length

14 nucleotides

Bulged bases

8XU8|1|A|U|1568, 8XU8|1|A|A|1571

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XU8|1|A|C|1563
8XU8|1|A|U|1564
8XU8|1|A|G|1565
8XU8|1|A|A|1566
8XU8|1|A|U|1567
8XU8|1|A|U|1568
8XU8|1|A|U|1569
8XU8|1|A|U|1570
8XU8|1|A|A|1571
8XU8|1|A|U|1572
8XU8|1|A|G|1573
8XU8|1|A|C|1574
8XU8|1|A|A|1575
8XU8|1|A|G|1576

Current chains

Chain A

25S rRNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain Z

Large ribosomal subunit protein uL23