HL_8XU8_071

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGUUAUCUUUU

Length

11 nucleotides

Bulged bases

8XU8|1|A|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XU8_071 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3572

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

8XU8|1|A|A|1679
8XU8|1|A|G|1680
8XU8|1|A|U|1681
8XU8|1|A|U|1682
8XU8|1|A|A|1683
8XU8|1|A|U|1684
8XU8|1|A|C|1685
8XU8|1|A|U|1686
8XU8|1|A|U|1687
8XU8|1|A|U|1688
8XU8|1|A|U|1689

Current chains

Chain A

25S rRNA

Nearby chains

Chain T

Large ribosomal subunit protein eL19A

Chain W

Large ribosomal subunit protein eL22A