HL_8XU8_086

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUUCAUUUU

Length

9 nucleotides

Bulged bases

8XU8|1|A|A|2540

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XU8_086 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2485

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8XU8|1|A|A|2536
8XU8|1|A|U|2537
8XU8|1|A|U|2538
8XU8|1|A|C|2539
8XU8|1|A|A|2540
8XU8|1|A|U|2541
8XU8|1|A|U|2542
8XU8|1|A|U|2543
8XU8|1|A|U|2544

Current chains

Chain A

25S rRNA

Nearby chains

Chain J

Large ribosomal subunit protein eL8A

Chain SQ

Small ribosomal subunit protein eS1A