HL_8XU8_088

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8XU8|1|A|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XU8_088 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1184

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8XU8|1|A|C|2616
8XU8|1|A|U|2617
8XU8|1|A|G|2618
8XU8|1|A|G|2619
8XU8|1|A|G|2620
8XU8|1|A|G|2621
8XU8|1|A|C|2622
8XU8|1|A|G|2623
8XU8|1|A|G|2624

Current chains

Chain A

25S rRNA

Nearby chains

Chain L

Large ribosomal subunit protein uL16

Chain d

Large ribosomal subunit protein eL29

Chain t

Transfer RNA; tRNA