HL_8XU8_090

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XU8_090 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.223

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8XU8|1|A|A|2673
8XU8|1|A|A|2674
8XU8|1|A|C|2675
8XU8|1|A|A|2676
8XU8|1|A|G|2677
8XU8|1|A|A|2678
8XU8|1|A|A|2679
8XU8|1|A|A|2680
8XU8|1|A|U|2681

Current chains

Chain A

25S rRNA

Nearby chains

Chain M

Large ribosomal subunit protein uL5B