HL_8XU8_101

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8XU8|1|A|G|3116, 8XU8|1|A|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XU8_101 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1433

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8XU8|1|A|C|3110
8XU8|1|A|U|3111
8XU8|1|A|G|3112
8XU8|1|A|A|3113
8XU8|1|A|A|3114
8XU8|1|A|C|3115
8XU8|1|A|G|3116
8XU8|1|A|C|3117
8XU8|1|A|C|3118
8XU8|1|A|U|3119
8XU8|1|A|C|3120
8XU8|1|A|U|3121
8XU8|1|A|A|3122
8XU8|1|A|A|3123
8XU8|1|A|G|3124

Current chains

Chain A

25S rRNA

Nearby chains

Chain K

Large ribosomal subunit protein uL6A

Chain Q

Large ribosomal subunit protein uL13A

Chain o

Large ribosomal subunit protein eL40A