HL_8XU8_103

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

8XU8|1|A|A|3243, 8XU8|1|A|A|3244, 8XU8|1|A|G|3246

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XU8_103 not in the Motif Atlas

Homologous match to HL_8P9A_180

Geometric discrepancy: 0.1283

The information below is about HL_8P9A_180

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31089.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8XU8|1|A|C|3240
8XU8|1|A|G|3241
8XU8|1|A|G|3242
8XU8|1|A|A|3243
8XU8|1|A|A|3244
8XU8|1|A|A|3245
8XU8|1|A|G|3246
8XU8|1|A|G|3247

Current chains

Chain A

25S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3

Chain Q

Large ribosomal subunit protein uL13A