HL_8XU8_104
3D structure
- PDB id
- 8XU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUAUACGAC
- Length
- 9 nucleotides
- Bulged bases
- 8XU8|1|A|U|3304
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8XU8_104 not in the Motif Atlas
- Homologous match to HL_8P9A_181
- Geometric discrepancy: 0.2967
- The information below is about HL_8P9A_181
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_37889.1
- Basepair signature
- cWW-cSW-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8XU8|1|A|G|3303
8XU8|1|A|U|3304
8XU8|1|A|A|3305
8XU8|1|A|U|3306
8XU8|1|A|A|3307
8XU8|1|A|C|3308
8XU8|1|A|G|3309
8XU8|1|A|A|3310
8XU8|1|A|C|3311
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL3
- Chain R
- Large ribosomal subunit protein uL22A
- Chain f
- Large ribosomal subunit protein eL31A
Coloring options: