HL_8XU8_116

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAUCGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XU8_116 not in the Motif Atlas

Homologous match to HL_1QU2_003

Geometric discrepancy: 0.2024

The information below is about HL_1QU2_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

96

Unit IDs

8XU8|1|t|G|53
8XU8|1|t|A|54
8XU8|1|t|U|55
8XU8|1|t|C|56
8XU8|1|t|G|57
8XU8|1|t|A|58
8XU8|1|t|A|59
8XU8|1|t|A|60
8XU8|1|t|C|61

Current chains

Chain t

tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain M

Large ribosomal subunit protein uL5B

Chain q

Large ribosomal subunit protein eL42A