HL_8XU8_117

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

8XU8|1|A|U|545, 8XU8|1|A|C|546

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XU8_117 not in the Motif Atlas

Homologous match to HL_8P9A_231

Geometric discrepancy: 0.4635

The information below is about HL_8P9A_231

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32682.1

Basepair signature

cWW-F-F

Number of instances in this motif group

3

Unit IDs

8XU8|1|A|C|543
8XU8|1|A|C|544
8XU8|1|A|U|545
8XU8|1|A|C|546
8XU8|1|A|G|547
8XU8|1|A|G|548

Current chains

Chain A

25S rRNA

Nearby chains