HL_8XXL_015
3D structure
- PDB id
- 8XXL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 40S ribosome with PDCD4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UCGGCGGGGCCCGA
- Length
- 14 nucleotides
- Bulged bases
- 8XXL|1|S2|G|786, 8XXL|1|S2|G|787, 8XXL|1|S2|G|788, 8XXL|1|S2|C|792
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8XXL_015 not in the Motif Atlas
- Geometric match to HL_5NFV_001
- Geometric discrepancy: 0.3773
- The information below is about HL_5NFV_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69752.4
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 7
Unit IDs
8XXL|1|S2|U|749
8XXL|1|S2|C|750
8XXL|1|S2|G|751
8XXL|1|S2|G|752
8XXL|1|S2|C|753
8XXL|1|S2|G|786
8XXL|1|S2|G|787
8XXL|1|S2|G|788
8XXL|1|S2|G|789
8XXL|1|S2|C|790
8XXL|1|S2|C|791
8XXL|1|S2|C|792
8XXL|1|S2|G|793
8XXL|1|S2|A|794
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SG
- 40S ribosomal protein S6
- Chain SH
- 40S ribosomal protein S7
Coloring options: