HL_8XXL_018
3D structure
- PDB id
- 8XXL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 40S ribosome with PDCD4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UAUUUUGUUGGUUUUCG
- Length
- 17 nucleotides
- Bulged bases
- 8XXL|1|S2|G|891, 8XXL|1|S2|U|892, 8XXL|1|S2|U|899
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8XXL_018 not in the Motif Atlas
- Geometric match to HL_7EQJ_004
- Geometric discrepancy: 0.3142
- The information below is about HL_7EQJ_004
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
8XXL|1|S2|U|885
8XXL|1|S2|A|886
8XXL|1|S2|U|887
8XXL|1|S2|U|888
8XXL|1|S2|U|889
8XXL|1|S2|U|890
8XXL|1|S2|G|891
8XXL|1|S2|U|892
8XXL|1|S2|U|893
8XXL|1|S2|G|894
8XXL|1|S2|G|895
8XXL|1|S2|U|896
8XXL|1|S2|U|897
8XXL|1|S2|U|898
8XXL|1|S2|U|899
8XXL|1|S2|C|900
8XXL|1|S2|G|901
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SG
- 40S ribosomal protein S6
Coloring options: