HL_8XXL_038
3D structure
- PDB id
- 8XXL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 40S ribosome with PDCD4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCCCGCCGGGGUCGGCCCACGGCCCUGGCGGAGCG
- Length
- 35 nucleotides
- Bulged bases
- 8XXL|1|S2|C|1753, 8XXL|1|S2|G|1760, 8XXL|1|S2|U|1761, 8XXL|1|S2|C|1762, 8XXL|1|S2|G|1763, 8XXL|1|S2|G|1764, 8XXL|1|S2|C|1765, 8XXL|1|S2|C|1766, 8XXL|1|S2|C|1767, 8XXL|1|S2|A|1768, 8XXL|1|S2|C|1769, 8XXL|1|S2|G|1770, 8XXL|1|S2|C|1774, 8XXL|1|S2|C|1783
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8XXL|1|S2|C|1750
8XXL|1|S2|C|1751
8XXL|1|S2|C|1752
8XXL|1|S2|C|1753
8XXL|1|S2|G|1754
8XXL|1|S2|C|1755
8XXL|1|S2|C|1756
8XXL|1|S2|G|1757
8XXL|1|S2|G|1758
8XXL|1|S2|G|1759
8XXL|1|S2|G|1760
8XXL|1|S2|U|1761
8XXL|1|S2|C|1762
8XXL|1|S2|G|1763
8XXL|1|S2|G|1764
8XXL|1|S2|C|1765
8XXL|1|S2|C|1766
8XXL|1|S2|C|1767
8XXL|1|S2|A|1768
8XXL|1|S2|C|1769
8XXL|1|S2|G|1770
8XXL|1|S2|G|1771
8XXL|1|S2|C|1772
8XXL|1|S2|C|1773
8XXL|1|S2|C|1774
8XXL|1|S2|U|1775
8XXL|1|S2|G|1776
8XXL|1|S2|G|1777
8XXL|1|S2|C|1778
8XXL|1|S2|G|1779
8XXL|1|S2|G|1780
8XXL|1|S2|A|1781
8XXL|1|S2|G|1782
8XXL|1|S2|C|1783
8XXL|1|S2|G|1784
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SG
- 40S ribosomal protein S6
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