HL_8XXM_018

3D structure

PDB id

8XXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

8XXM|1|S2|G|891, 8XXM|1|S2|U|892, 8XXM|1|S2|U|899

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XXM_018 not in the Motif Atlas

Geometric match to HL_7EQJ_004

Geometric discrepancy: 0.294

The information below is about HL_7EQJ_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

8XXM|1|S2|U|885
8XXM|1|S2|A|886
8XXM|1|S2|U|887
8XXM|1|S2|U|888
8XXM|1|S2|U|889
8XXM|1|S2|U|890
8XXM|1|S2|G|891
8XXM|1|S2|U|892
8XXM|1|S2|U|893
8XXM|1|S2|G|894
8XXM|1|S2|G|895
8XXM|1|S2|U|896
8XXM|1|S2|U|897
8XXM|1|S2|U|898
8XXM|1|S2|U|899
8XXM|1|S2|C|900
8XXM|1|S2|G|901

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6