3D structure

PDB id
8XXM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UGCAAA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8XXM_024 not in the Motif Atlas
Homologous match to HL_8C3A_216
Geometric discrepancy: 0.0821
The information below is about HL_8C3A_216
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.5
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
302

Unit IDs

8XXM|1|S2|U|1178
8XXM|1|S2|G|1179
8XXM|1|S2|C|1180
8XXM|1|S2|A|1181
8XXM|1|S2|A|1182
8XXM|1|S2|A|1183

Current chains

Chain S2
18S rRNA

Nearby chains

Chain Ln
60S ribosomal protein L41

Coloring options:


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