HL_8XXM_037

3D structure

PDB id

8XXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCCCGCCGGGGUCGGCCCACGGCCCUGGCGGAGCG

Length

35 nucleotides

Bulged bases

8XXM|1|S2|C|1753, 8XXM|1|S2|G|1760, 8XXM|1|S2|U|1761, 8XXM|1|S2|C|1762, 8XXM|1|S2|G|1763, 8XXM|1|S2|G|1764, 8XXM|1|S2|C|1765, 8XXM|1|S2|C|1766, 8XXM|1|S2|C|1767, 8XXM|1|S2|A|1768, 8XXM|1|S2|C|1769, 8XXM|1|S2|G|1770, 8XXM|1|S2|C|1774, 8XXM|1|S2|C|1783

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XXM|1|S2|C|1750
8XXM|1|S2|C|1751
8XXM|1|S2|C|1752
8XXM|1|S2|C|1753
8XXM|1|S2|G|1754
8XXM|1|S2|C|1755
8XXM|1|S2|C|1756
8XXM|1|S2|G|1757
8XXM|1|S2|G|1758
8XXM|1|S2|G|1759
8XXM|1|S2|G|1760
8XXM|1|S2|U|1761
8XXM|1|S2|C|1762
8XXM|1|S2|G|1763
8XXM|1|S2|G|1764
8XXM|1|S2|C|1765
8XXM|1|S2|C|1766
8XXM|1|S2|C|1767
8XXM|1|S2|A|1768
8XXM|1|S2|C|1769
8XXM|1|S2|G|1770
8XXM|1|S2|G|1771
8XXM|1|S2|C|1772
8XXM|1|S2|C|1773
8XXM|1|S2|C|1774
8XXM|1|S2|U|1775
8XXM|1|S2|G|1776
8XXM|1|S2|G|1777
8XXM|1|S2|C|1778
8XXM|1|S2|G|1779
8XXM|1|S2|G|1780
8XXM|1|S2|A|1781
8XXM|1|S2|G|1782
8XXM|1|S2|C|1783
8XXM|1|S2|G|1784

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6