HL_8XXN_015

3D structure

PDB id

8XXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 43S ribosome with PDCD4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCGGCGGGGCCCGA

Length

14 nucleotides

Bulged bases

8XXN|1|S2|G|786, 8XXN|1|S2|G|787, 8XXN|1|S2|G|788

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XXN|1|S2|U|749
8XXN|1|S2|C|750
8XXN|1|S2|G|751
8XXN|1|S2|G|752
8XXN|1|S2|C|753
8XXN|1|S2|G|786
8XXN|1|S2|G|787
8XXN|1|S2|G|788
8XXN|1|S2|G|789
8XXN|1|S2|C|790
8XXN|1|S2|C|791
8XXN|1|S2|C|792
8XXN|1|S2|G|793
8XXN|1|S2|A|794

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SG

40S ribosomal protein S6

Chain SH

40S ribosomal protein S7