HL_8XXN_022
3D structure
- PDB id
- 8XXN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 43S ribosome with PDCD4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UAUUCCCAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8XXN_022 not in the Motif Atlas
- Homologous match to HL_8P9A_212
- Geometric discrepancy: 0.5635
- The information below is about HL_8P9A_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_61768.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8XXN|1|S2|U|1112
8XXN|1|S2|A|1113
8XXN|1|S2|U|1114
8XXN|1|S2|U|1115
8XXN|1|S2|C|1116
8XXN|1|S2|C|1117
8XXN|1|S2|C|1118
8XXN|1|S2|A|1119
8XXN|1|S2|U|1120
8XXN|1|S2|G|1121
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain 3A
- Eukaryotic translation initiation factor 3 subunit A
- Chain 3C
- Eukaryotic translation initiation factor 3 subunit C
- Chain 3N
- Eukaryotic translation initiation factor 3 subunit D
- Chain SB
- 40S ribosomal protein S3a
- Chain Sb
- 40S ribosomal protein S27
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