HL_8XXN_024

3D structure

PDB id

8XXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 43S ribosome with PDCD4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGCAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XXN_024 not in the Motif Atlas

Homologous match to HL_4V88_211

Geometric discrepancy: 0.0875

The information below is about HL_4V88_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8XXN|1|S2|U|1178
8XXN|1|S2|G|1179
8XXN|1|S2|C|1180
8XXN|1|S2|A|1181
8XXN|1|S2|A|1182
8XXN|1|S2|A|1183

Current chains

Chain S2

18S rRNA

Nearby chains

Chain 3C

Eukaryotic translation initiation factor 3 subunit C

Chain Ln

60S ribosomal protein L41