HL_8XXN_038

3D structure

PDB id

8XXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 43S ribosome with PDCD4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUUCCCAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XXN|1|S2|A|1113
8XXN|1|S2|U|1114
8XXN|1|S2|U|1115
8XXN|1|S2|C|1116
8XXN|1|S2|C|1117
8XXN|1|S2|C|1118
8XXN|1|S2|A|1119
8XXN|1|S2|U|1120

Current chains

Chain S2

18S rRNA

Nearby chains

Chain 3A

Eukaryotic translation initiation factor 3 subunit A

Chain 3C

Eukaryotic translation initiation factor 3 subunit C

Chain 3N

Eukaryotic translation initiation factor 3 subunit D

Chain SB

40S ribosomal protein S3a

Chain Sb

40S ribosomal protein S27