HL_8XZ3_003

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

8XZ3|1|A|A|122

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XZ3_003 not in the Motif Atlas

Homologous match to HL_8VTW_003

Geometric discrepancy: 0.1386

The information below is about HL_8VTW_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82710.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8XZ3|1|A|G|120
8XZ3|1|A|G|121
8XZ3|1|A|A|122
8XZ3|1|A|A|123
8XZ3|1|A|A|124
8XZ3|1|A|C|125

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

Large ribosomal subunit protein uL23

Chain d

Large ribosomal subunit protein bL34