HL_8XZ3_017

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XZ3_017 not in the Motif Atlas

Homologous match to HL_4WF9_016

Geometric discrepancy: 0.0944

The information below is about HL_4WF9_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8XZ3|1|A|C|575
8XZ3|1|A|G|576
8XZ3|1|A|G|577
8XZ3|1|A|G|578
8XZ3|1|A|A|579
8XZ3|1|A|G|580

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

Large ribosomal subunit protein uL22