HL_8XZ3_025
3D structure
- PDB id
- 8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGUUGAAGAC
- Length
- 10 nucleotides
- Bulged bases
- 8XZ3|1|A|U|862, 8XZ3|1|A|G|866, 8XZ3|1|A|A|867
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8XZ3_025 not in the Motif Atlas
- Homologous match to HL_7A0S_022
- Geometric discrepancy: 0.1522
- The information below is about HL_7A0S_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.2
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 12
Unit IDs
8XZ3|1|A|G|859
8XZ3|1|A|G|860
8XZ3|1|A|U|861
8XZ3|1|A|U|862
8XZ3|1|A|G|863
8XZ3|1|A|A|864
8XZ3|1|A|A|865
8XZ3|1|A|G|866
8XZ3|1|A|A|867
8XZ3|1|A|C|868
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL3
- Chain T
- Large ribosomal subunit protein uL22
- Chain b
- Large ribosomal subunit protein bL32
- Chain d
- Large ribosomal subunit protein bL34
Coloring options: