HL_8XZ3_061

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGACAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8XZ3_061 not in the Motif Atlas

Homologous match to HL_4WF9_053

Geometric discrepancy: 0.1897

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8XZ3|1|A|C|2579
8XZ3|1|A|G|2580
8XZ3|1|A|G|2581
8XZ3|1|A|A|2582
8XZ3|1|A|C|2583
8XZ3|1|A|A|2584
8XZ3|1|A|U|2585
8XZ3|1|A|G|2586

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

Large ribosomal subunit protein uL15

Chain X

Large ribosomal subunit protein bL27

Chain e

Large ribosomal subunit protein bL35