HL_8Y0U_005

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

8Y0U|1|C1|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.1377

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8Y0U|1|C1|U|194
8Y0U|1|C1|U|195
8Y0U|1|C1|G|196
8Y0U|1|C1|G|197
8Y0U|1|C1|A|198
8Y0U|1|C1|A|199
8Y0U|1|C1|C|200
8Y0U|1|C1|A|201

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LY

Large ribosomal subunit protein uL24A

Chain Le

Large ribosomal subunit protein eL32