HL_8Y0U_012

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

8Y0U|1|C1|U|545, 8Y0U|1|C1|C|546

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_012 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.299

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

8Y0U|1|C1|C|543
8Y0U|1|C1|C|544
8Y0U|1|C1|U|545
8Y0U|1|C1|C|546
8Y0U|1|C1|G|547
8Y0U|1|C1|G|548

Current chains

Chain C1

25S rRNA

Nearby chains