HL_8Y0U_023

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

8Y0U|1|C1|U|1028

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_023 not in the Motif Atlas

Homologous match to HL_5TBW_023

Geometric discrepancy: 0.2456

The information below is about HL_5TBW_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8Y0U|1|C1|C|1023
8Y0U|1|C1|G|1024
8Y0U|1|C1|A|1025
8Y0U|1|C1|A|1026
8Y0U|1|C1|A|1027
8Y0U|1|C1|U|1028
8Y0U|1|C1|G|1029

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LJ

Large ribosomal subunit protein uL5B

Chain SP

Small ribosomal subunit protein uS19

Chain s

Suppressor protein STM1