HL_8Y0U_031

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_031 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.1764

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8Y0U|1|C1|A|1462
8Y0U|1|C1|U|1463
8Y0U|1|C1|G|1464
8Y0U|1|C1|A|1465
8Y0U|1|C1|G|1466
8Y0U|1|C1|A|1467
8Y0U|1|C1|A|1468
8Y0U|1|C1|C|1469
8Y0U|1|C1|U|1470

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LP

Large ribosomal subunit protein uL22A

Chain LR

Large ribosomal subunit protein eL19A

Chain Ld

Large ribosomal subunit protein eL31A