HL_8Y0U_033

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GAAGCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_033 not in the Motif Atlas

Homologous match to HL_8C3A_033

Geometric discrepancy: 0.1415

The information below is about HL_8C3A_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8Y0U|1|C1|G|1544
8Y0U|1|C1|A|1545
8Y0U|1|C1|A|1546
8Y0U|1|C1|G|1547
8Y0U|1|C1|C|1548
8Y0U|1|C1|U|1549

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LN

Large ribosomal subunit protein eL15A

Chain Lj

Large ribosomal subunit protein eL37A