HL_8Y0U_039

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

8Y0U|1|C1|U|1764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_039 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3424

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

8Y0U|1|C1|C|1759
8Y0U|1|C1|A|1760
8Y0U|1|C1|C|1761
8Y0U|1|C1|C|1762
8Y0U|1|C1|U|1763
8Y0U|1|C1|U|1764
8Y0U|1|C1|U|1765
8Y0U|1|C1|G|1766

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LR

Large ribosomal subunit protein eL19A

Chain LU

Large ribosomal subunit protein eL22A