HL_8Y0U_044

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GGGUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_044 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.3655

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8Y0U|1|C1|G|1952
8Y0U|1|C1|G|1953
8Y0U|1|C1|G|1954
8Y0U|1|C1|U|1955
8Y0U|1|C1|A|2093
8Y0U|1|C1|C|2094

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LR

Large ribosomal subunit protein eL19A