HL_8Y0U_047

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

8Y0U|1|C1|G|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_047 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.212

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8Y0U|1|C1|A|2164
8Y0U|1|C1|G|2165
8Y0U|1|C1|A|2166
8Y0U|1|C1|A|2167
8Y0U|1|C1|A|2168
8Y0U|1|C1|G|2169
8Y0U|1|C1|U|2170

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2A

Chain LG

Large ribosomal subunit protein eL8A

Chain LN

Large ribosomal subunit protein eL15A