HL_8Y0U_051

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8Y0U|1|C1|A|2372, 8Y0U|1|C1|A|2373, 8Y0U|1|C1|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_051 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.112

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8Y0U|1|C1|G|2369
8Y0U|1|C1|G|2370
8Y0U|1|C1|G|2371
8Y0U|1|C1|A|2372
8Y0U|1|C1|A|2373
8Y0U|1|C1|C|2374
8Y0U|1|C1|G|2375
8Y0U|1|C1|G|2376
8Y0U|1|C1|G|2377
8Y0U|1|C1|C|2378

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain Le

Large ribosomal subunit protein eL32