HL_8Y0U_057

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_057 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.1007

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8Y0U|1|C1|A|2673
8Y0U|1|C1|A|2674
8Y0U|1|C1|C|2675
8Y0U|1|C1|A|2676
8Y0U|1|C1|G|2677
8Y0U|1|C1|A|2678
8Y0U|1|C1|A|2679
8Y0U|1|C1|A|2680
8Y0U|1|C1|U|2681

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LJ

Large ribosomal subunit protein uL5B

Chain s

Suppressor protein STM1