HL_8Y0U_064

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y0U_064 not in the Motif Atlas

Homologous match to HL_8C3A_064

Geometric discrepancy: 0.18

The information below is about HL_8C3A_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8Y0U|1|C1|U|2920
8Y0U|1|C1|U|2921
8Y0U|1|C1|G|2922
8Y0U|1|C1|U|2923
8Y0U|1|C1|U|2924
8Y0U|1|C1|C|2925
8Y0U|1|C1|A|2926

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3